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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031878 Open in IMG/M |
| Scaffold ID | Ga0308404_1002462 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5113 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F002229 | Metagenome / Metatranscriptome | 580 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002795 | Metagenome / Metatranscriptome | 529 | Y |
| F004024 | Metagenome / Metatranscriptome | 456 | N |
| F008135 | Metagenome / Metatranscriptome | 338 | Y |
| F015735 | Metagenome / Metatranscriptome | 252 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308404_10024621 | F000855 | N/A | LEDFFSKVVSWFDERAASIYNAVVAFINVLVDIWNGWMDTLLHPAQAMPSIPALRWIVDWLGDIADYTRLMYMIVDYVAYASVVQQALLAQLTIVTIGLAFRAWLVIRRIVLVS |
| Ga0308404_100246210 | F002372 | AGGGGG | MPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVMYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSVGGAEGV |
| Ga0308404_100246211 | F015735 | GAGG | MVVYHHWSVEWHPRDNPPHGLPRVVCIARRAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGAGYEVVWRLSVVVDDADGDAPPDGAWSDDPLYRARRRLLRWIMRSQCPIPALADHFADEHFRASPGYFGLE |
| Ga0308404_10024623 | F000642 | AGGAG | MQEMSVALALCAVGAAIWYMRRCDAGAGRVTGWLLLYDDLGGWRVLPASYGDSGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILALVGDK |
| Ga0308404_10024625 | F004024 | GAGG | MPSERDYLRQPSSLSDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRER |
| Ga0308404_10024627 | F002229 | GGAGG | MVTLLTLDGVEGVDYVPSDAEIRVSLDDRALYGMVLNGVTWMRLVSGAGWWTVVCDRRVTATLAAVGWCWVADGLGVRGYWSPALACIPGEVRALCGGCGGCVDDDDGGDEE |
| Ga0308404_10024628 | F008135 | AGGAGG | MRAVIDPRTERVLTEAGAGIARVLDDRQRRAVALAIEVCWYIVAALPPDGSVTFGDVVRLLRWFARGFNEGVEVDDGDE |
| Ga0308404_10024629 | F002795 | GGAGG | MATNSGLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGELVELPARLQFVRDASGRPTVRLYVDEGVR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |