NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1002848

Scaffold Ga0308404_1002848


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1002848 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4714
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037460Metagenome / Metatranscriptome168N
F052925Metagenome142Y
F069505Metagenome124N
F093910Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10028481F037460GGAGGMPQESKISDGIAFFDAAVRLLRKGWPPMPPLITGYVNYIRYGSVYWRCANGPLVLRWAEKIRQRQDWYGYAEPLLAYFFPCHPFRRPEWRPPEGILDGENPFNAIGWPAKALVLEWRQAARRRQPLWHPAHYVVYYRFFDNRVPEWNAFYLYLAVFLRRELTQLQAARPAEWLLLDGPAPIDSLSPAPHFSLAPGLQASWQDWLRAVRPVAKPYHFKRHKCLLA
Ga0308404_10028482F052925AGGAGGMKENCFYYWEELRKTIEGLTPYDEDVRKLTALERAFARANEAWETAWTVASQATADWDKRHAVASALLWLEHKGLYGGGCFVPGAGTKRLRFFRSLGKGRRKASDGPAWTEAIRQAALKHGWCEWAFAGEGLGVHFEPHPHEQEALKEYTLPLREVLFLDGDESADAMEAWVGACKHAIREFGRPRPYGVGEKTRDLFLTAVQEYTEAKETLTKAREREAAAPREAKDAPGV
Ga0308404_10028484F093910GGAGGMDVRRYIRPRLWVSHEELLASPLEGWVVGVYEDTTYGERRPRLVLEIAQDDGVRRRIPLNQASIENVATAWGYESKNWVRHRVRISIAHKNIQGKYVQVRMVTPITTVPPIAELPEDPNPPQEPDDVPF
Ga0308404_10028485F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIDGCADVACKAVTAARLLSKAETLDEAVQAFRSAPELDDLPQPGADIFAQVYSIFESEKSRLFYSRVFGDSLPGSSEDEKVVHAFLSFLEALATALERGVGG
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