NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1002919

Scaffold Ga0308404_1002919


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1002919 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4632
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10029192F010840AGGAGGVNLPFSQPLDKITFGALAAATVIILTWALREFAGIDLPAEVQSALAVIFGYVVSYHIPLSETEAEAIARKYYKYK
Ga0308404_10029193F051735GGAGGMFRDVTIINGPVPKDGVADYERVRVKARPLGRPYAWDNGRAWNPYTTNGGFLLVFECEDGAVYIQEIEWEVDPYPAADPSPRTYYYYERYDSLDEARAGGRGRLIEYALGNE
Ga0308404_10029194F006418AGAAGGMSKRRSASKPRPEREIIIEEGSDYRILFDRETRDFAVEYRGQPVGWRPNEAEARRLVETLRYDDARRGE
Ga0308404_10029197F007976AGGAMPSSELAHFLRVALEIQATPYDGIHVAEGLMAATDGVMLVAKKFDDLVFLRGEGAISPKAARVLEALAQVTWVGRIEVDGNRVTATVQSTRYDEKLGVEAAGEYCEVKLPDFHCPRAPVARMLGVLTDEGRGWVNLVENPKLKTVKEANAKEYVALVEDPRSGEELFRPKSDAATHWYSVGQLRRGLRLFGKNSRLSVRRSSSGWLAFGDQWGYTFAVTPFIKYN
Ga0308404_10029199F002982AGGAGVKLQFERTPTAICAVLTDAGECDRIITVARPSDAFDALALDVHTAAHKPLDALFALSRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETDAATLSEALARCVWALAS
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