NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1002974

Scaffold Ga0308404_1002974


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1002974 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4588
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F007172Metagenome / Metatranscriptome356Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_100297411F007172AGGAGGMTTPTTLTTPQRRAFAAALREAKQNDHCKAVGGFAIARMSDGTIEWFPFGQPPHQGGEPDRGAVILGKWRWNHRRWSRIE
Ga0308404_10029742F004024AGGAMRSERDYVRQPSLNDDDMMFLDARATLASALARAVVGYSDSRVRALAWLAVATPRLYDRIAPIVESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308404_10029745F008135AGGAGGMRAVDDPRTERVLTEASTSIARVLDARQRHAIVLAVDVVWYIVAALPPDEEMTCRDVVRLLRWFRKGFQEEDDGDE
Ga0308404_10029747F002795GGAGGMPATTGLVLRGMVASYREFVSRKDGRVYRVVTVYGDLVVGEDVLCQIDGYDVFVDSPGYARGEMVSFPARLQFVRDSSGRPAVRLYVDEGVR
Ga0308404_10029748F002372AGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDYYPYAIVELLRVRDNAPPLVLRSVYVQANRQWEYHSEYTLRVVEAALRLVEEYRADPSLGGAEAVWP
Ga0308404_10029749F015735AGGCGGVIVYHHWSVEWHPRDVDPPGGLPRVVCVARRAVSDPFAGPGPFPPDVDRALCYWNRIASGGARDHGAGYEVVWRVSVVVDDDDADGDAPEGAWSDDPEYVARRRLLRWIMRRQRPMFVDHFAAEHFCDHPDYFGLLEPGA
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