NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1003362

Scaffold Ga0308404_1003362


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1003362 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4287
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007172Metagenome / Metatranscriptome356Y
F012676Metagenome / Metatranscriptome278Y
F054900Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10033622F012676GGAMEPQTVVKSSVERNDMNSIKIAAGWDGNPMSLTHPEHGWIRFLEVRGIAYAAYLSEPAGWRIVVEDEEKFMRLIPKLRKYNIHGIYEWTYDIHP
Ga0308404_10033623F007172AGGAGGMNTLERRTFAAALRAAKRNTYCRAVGGFVIVRMSDGSIDWFPLGQPPHRGGEEDRGAVILGKWRWNHKRWSRVA
Ga0308404_10033625F054900GGAMISHGCANIGAMEYERAVFQLAVYVVVLVMLYVVDVWSR
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