NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1003961

Scaffold Ga0308404_1003961


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1003961 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3932
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10039612F002372AGGAGMPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVQANRQWERHSEFALRIVEAALQLVQEYRADPTLGGAEAWA
Ga0308404_10039613F002795GGAGGMSTNGLVLRGMVASYREFTSRKDGKTYRIVTVYGDLVVGEVVLCVVDGYDVFVDSPDYSRGEMVELPARLQFVRDASGRPVVRLYVDEGVR
Ga0308404_10039614F008135N/AMRAVNDPRTERVLTEAGAGIARVLDARQRHAVALALEVCWYIVAALPPDGSVTFGDVVQLLRWFARGFNEDVEGDDVD
Ga0308404_10039615F002229GGAGGMVTLLTLDGVEDVDYVPSDAEIRVSLDDSGLYGMVLGGVTWMRLTSGVGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRVMCGCVEDEDEDGDDEE
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