NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1005752

Scaffold Ga0308404_1005752


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1005752 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3182
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10057522F016100AGGAGGMVTSVKVERFKDYTELVRVISRSEKTPATNKDIIRPLNYELFIGSHLPESDWHRLGALAVQLFRDSGVVDTEIWQTDTGLWIADALINFGSRRRLRRGEGETPVQAVIELITDIQRY
Ga0308404_10057525F014738AGGGGGMKLDVLLMISAFVLAFVHPDAAQVAATAVVLLLVVRIERARKAGKRKAPRRVAGARSGDGGGV
Ga0308404_10057526F007404GGAGGVDIVEIFQLLAAGHSGLTAIDYVWNAVFGAIGAATAYLADKEGEVLLPRYDRERHSVELGALGRVLTGAGAGVLVGYSGYIPFIAGVVAPTLLPVLVDKIAGFVGRGRK
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