NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1006395

Scaffold Ga0308404_1006395


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1006395 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2986
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10063953F004307AGGAMFKELINKEEERPELNGAYIGRFLGVKERQRPTFETRNAPEPILEDAFVFEFEVVDADLETPVRVSKWVRKPARLDHPGKSGKATNLYKVLAWLYGVSVMTDEQLERAEEFVQNAVGCEYQLTLQTKPNGWCEIVHIAPVRARLRKTKEDEVPF
Ga0308404_10063954F008499N/AMKSRSEPRWKRKERDALRALQAIFGRVSDPSLSRLLTPTGRVGHLTRFGIDGFVGDNPGFAVEVKARRKMLNKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308404_10063955F018115AGGAGMNDAEERFVRWYAHLAEDAPLDRHAARALLRRALADREALAEFLLEQCTPALLGEFINRHWNAALSDAARGASLRLASRTLRALDCLEERDRRAAEWWFRLGLVPSTRVLRRLCEEIDDA
Ga0308404_10063956F005028AGGAGMRDDDLRAAMSFFAERLRGVDGDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHIPTLNESAAVGETYTDPDAADAHLGLCWRLDEDVLTVLSDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVLMLARVLERK
Ga0308404_10063958F032180AGGAMWWKIEEIPEQELENWANAVGRFERAAKRDVAVRAAGAFVIYSLSDGTLGYVAGREAPDGAYLVERWVRGKRGWTLYE
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