Scaffold Ga0306919_10003871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306919_10003871

Scaffold Ga0306919_10003871

Overview

Basic Information
Taxon OID	3300031879 Open in IMG/M
Scaffold ID	Ga0306919_10003871 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7691
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008409	Metagenome	333	Y
F049350	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306919_100038714	F008409	GAGG	MWPLAIFLMLVVAFYWFAFMGTIWFCFNGIMALWAGHFIRASIWFSLGVGMLFWWQGTEVIPHPWDFDKWLRGSAMIVGIGALGTFVRFYRRHKRAVEAVPPFEPAPVVLNINIELNPSSHADRRAVHDDLAALASALRGAIGTEQGPRRLSGPTVN
Ga0306919_100038716	F049350	AGGAG	MVARTIPFKPRDKPDEQLPSIAEEMQRQSEADQKDIKKQLKHANEQLALTNVYPDRRGGSQST

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