NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306919_10415860

Scaffold Ga0306919_10415860


Overview

Basic Information
Taxon OID3300031879 Open in IMG/M
Scaffold IDGa0306919_10415860 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1032
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022331Metagenome / Metatranscriptome214Y
F026464Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0306919_104158601F022331AGGAGGMQLSSIELRTLVAAQIASGLVGHVAPDSPQATIDEVAQLAVRIAKTLQELAIKSMHQKETPP
Ga0306919_104158602F026464AGGAGGMDQRRTRQIPDDELVEIADQPQLWISKDGYVKTLRAGLVRAAHITGQGRSPFPLESPNGTRVELAQMSRLWNRLGIVQEKGSA

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