 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031884 Open in IMG/M |
| Scaffold ID | Ga0316220_1004067 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11549 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020513 | Metagenome | 223 | Y |
| F070626 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316220_10040671 | F020513 | AGG | MLNKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPVVTPGIDYATAVITKCLMPNGKVNFEFERFDENDQDAAEQSTEMVKYFINNKNNSYMIIRDWAQDALLHKNGIVMVTPVRDNIVQYKEVTGTRDQLKVFEIEATQKGLKPLRQEMRKVDVNLQQAMMEAMQPGDEQESEQETDPNAELNEAIQKNTVYRAKYKLTGTKTNIRIKHVAQHYFVCNPTIPEIMYQDFVGFYEPMTIHEAKVQYPFIDMEEFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYARVVMLTTAWLRKDVDNDGEEEIVEVCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSVKRAQLSFAMQASTPKMGVNPEFIDAEEIQRGVSALFILDRK |
| Ga0316220_100406711 | F070626 | AGGAGG | MEIEWALAHPLHDVEDIVNMADHIFGDEVQNVLTTNRLVFEKNVTIATTVQCFDKTKEFIAVARPANFSGTGEFNNKLLGFCWFDRYGYTTYSNEEISNAKFHHVDLALPAKLRVKLLNAMIDQHILWAYHNGIPIICSTSIRADHNGFMRIHAKRGFEVKGSYAWIKTKDGLNGIKGIEIGSSQAS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |