NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315285_10087182

Scaffold Ga0315285_10087182


Overview

Basic Information
Taxon OID3300031885 Open in IMG/M
Scaffold IDGa0315285_10087182 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2766
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066778Metagenome / Metatranscriptome126Y
F072341Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0315285_100871822F066778N/AMSYTREPNWQKLKPTIDWDEQEEKLADKLDKYINKNNTVMNQGIVKQQKFVRTWNGPSGEIHYFDLVLENGEIGQIGVKDMNSPKIAVGATLHYTVEERTGPTGKKSTNFKMQNPMQYSGTTAAPSGAGNSSSNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDAAEIFLAWLKGEAVEAVEIKAVTNESADDEMPF
Ga0315285_100871827F072341N/AMSKELAGLVQQSFNRSLSAEERAIAECISSPKLHSLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQVTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALILPENKPKHIEPTDPLNVLHADVDRWNQRKEIWVEISAPYNCQRLFKSGIYKKSMWAPEVWARFEDIAKQKVEGKFKASNKVILGESAQAEFDGLQKIELSR
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