NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315318_10209357

Scaffold Ga0315318_10209357


Overview

Basic Information
Taxon OID3300031886 Open in IMG/M
Scaffold IDGa0315318_10209357 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007052Metagenome / Metatranscriptome359Y
F036420Metagenome170Y
F045361Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0315318_102093571F036420N/AMEVKIHARNIDSRLKIALYAMTNFAMARLVPSNRLRNNVSINVHLKHHEENGEAMLEDYANRYHPRD
Ga0315318_102093573F007052AGGAGMERNETYFVARLLKKGEFLSSEIFESLEEARLWAMREAKLLISDLEMLRMTNVGDICVEIDKHFFGYEISSEELLRNSERVV
Ga0315318_102093574F045361GAGMVRMLMMAGLVVGAYVAGYNGVTHVEVMEFVENSMSYVEGMMEYAESFRDEASSVVESVNEVVEGVL
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