NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306925_10020702

Scaffold Ga0306925_10020702


Overview

Basic Information
Taxon OID3300031890 Open in IMG/M
Scaffold IDGa0306925_10020702 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6560
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000257Metagenome / Metatranscriptome1447Y
F003372Metagenome / Metatranscriptome491Y

Sequences

Protein IDFamilyRBSSequence
Ga0306925_100207025F003372GGAMAITHGKSPFVFGMVILATLLIATPVAHAACKSPKNICKHFDDCLQRTSDPNNKDADGIRAGVKARNGQIVLAGAEACARDLSRKQQWDKWARGCSELEFVQIAKVQLELGRVYCDRYSQ
Ga0306925_100207026F000257GAGGMTRRKREITGLANEQDFPHLVELALLPGGFRSVFLEIDAFHRDRRIPVRRGRSRHEAEQSHIRFCFPDTATADAFRNRFGGECLTYALGKPKPRISATSSDAPAVKRESEEDWGKGR
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