NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306925_10058359

Scaffold Ga0306925_10058359


Overview

Basic Information
Taxon OID3300031890 Open in IMG/M
Scaffold IDGa0306925_10058359 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4038
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001907Metagenome / Metatranscriptome619Y
F028012Metagenome / Metatranscriptome193N
F096427Metagenome104Y
F098426Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0306925_1005835910F096427GAGMRVLAGTIKERATKAIMLRIANDYDRLARHADARTGNRTNK
Ga0306925_1005835912F028012GGAGMAANHIFGLGNPVPTATATLVAAILVISTMPVQGQQPSADQLKAYAQNTVKIISGDKQRIEAFCELNDLTNQLDQAVDEKDTRKAEEVSQKGEELLRELGPEFAALADGINSVNLSSQDAREIGSIIGN
Ga0306925_100583593F001907AGGMNTERLARHHEAREALVLSVAGVTAIMLIANLLLLILY
Ga0306925_100583596F098426N/AMTLTNLPPGSGLFVLLALFLTVATIWLLLRAIETRPNEIDLRLFLVSIVVIIPFVMVIYFGLATIICNEIVAGRPTLPVELSLRKIVPATVTYIGLSAWVWLRWRKVGYLR
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