NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306925_10194376

Scaffold Ga0306925_10194376


Overview

Basic Information
Taxon OID3300031890 Open in IMG/M
Scaffold IDGa0306925_10194376 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2187
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003480Metagenome / Metatranscriptome484Y
F019071Metagenome231Y
F021226Metagenome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0306925_101943762F019071GGAVDRCDAYRHFGAQCVELARRMESPRDRSIMFEMALVWRHLAEYAAKTAACKECTESISPASVDGKRTQHIG
Ga0306925_101943765F021226GAGMGTRCTVLLPVREGKIWRVQIVWPNGAVHHFGKFTSKEDAVDWIAAHSQLTTNARENTIIELPKAN
Ga0306925_101943766F003480AGGAVDPTPSLLSFGEAIALVRQRLNVSSGRAAEVIREALKSRELRIIRDDHIDPISSSLFAIVEEDFLNWLNRHASTTAITPQAARKQPDRELVRQAAIELWGTAGPPDHLSNLSICREVSQWLKKNDQEADISDATILRAVGRK
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