NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306925_10596311

Scaffold Ga0306925_10596311


Overview

Basic Information
Taxon OID3300031890 Open in IMG/M
Scaffold IDGa0306925_10596311 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1167
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000726Metagenome / Metatranscriptome918Y
F000834Metagenome / Metatranscriptome870Y

Sequences

Protein IDFamilyRBSSequence
Ga0306925_105963111F000726N/AKVMDLTPAGSSHEIIGRDERLVHDWRAGQLTRLGIPGSLAEAVADRVDWHQIAALIRHGCPPRLALRIVL
Ga0306925_105963112F000834AGGAGGMPSHDSVKQNGAGHGGQARTGALPGPLRHFATLLDELRSRDILDMQQVGRLLVELAADEEFFAPLIDQIPAAAPGDRWLIRPDRGPRLVLVHRPEGLMGYTHSHRCWVGIAPVRGVETHQRWDAVRHAGGRADLRLQDERALVHGEAATLVPPRDVHNHGHVVGSGPSPYSLIMLGDDMLLFDREEYDPEQGTWRALGPGDPGWSNR
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