NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306925_11019325

Scaffold Ga0306925_11019325


Overview

Basic Information
Taxon OID3300031890 Open in IMG/M
Scaffold IDGa0306925_11019325 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022093Metagenome / Metatranscriptome216Y
F034727Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0306925_110193251F034727AGGMTTDEVLDALGRYIKESKESDRQTAMKLGMRCPILEDWLSGKTRPQKAALARLAGFLRRTGYL
Ga0306925_110193252F022093N/APRLVVIPNRSQPAVSPICVIGDAGRALAQMSTLMRVEFSRGLRPDSPRFVLMIEIPDSAVAELNARKISLETRAYEIASEMRYADPLNRPESHMNLMSCTKGKVKNLEALGEPNLQAHDACRAWVIKRPSPLQELVDKRWQSRRKNPGSSG
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Institute for Fundamental Biomedical Research
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