NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318536_10469480

Scaffold Ga0318536_10469480


Overview

Basic Information
Taxon OID3300031893 Open in IMG/M
Scaffold IDGa0318536_10469480 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001673Metagenome / Metatranscriptome654Y
F040227Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0318536_104694801F040227N/ARTYIRLRARVDHLEDASSHFYNVINELRRRVSTLEKKLKPLGKDD
Ga0318536_104694802F001673GAGGMRRPWVAMASFVAVLLVLALGHRWSVTASWFTSDKTCRERHATPWFAARLGMDCDRLLRARLWKLYDEGQFGRLRRGRGAVEYMKHLA

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