NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318536_10655889

Scaffold Ga0318536_10655889


Overview

Basic Information
Taxon OID3300031893 Open in IMG/M
Scaffold IDGa0318536_10655889 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014403Metagenome263Y
F015913Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0318536_106558891F014403N/AAQDEYLQLTGSFHMGVGIGVAAFDLAESAAGTLVRFSFRAIGVVDAEVAGAMSRAWTELVGTRLKGLVETGTRLGIDPDEPRTIRSIK
Ga0318536_106558892F015913AGGAMPTDVASTEYGVIIHYDDWNTLELKWLPTTKDATEAQARDTMALFAAETEKQKTRFIR

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