NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318520_10022201

Scaffold Ga0318520_10022201


Overview

Basic Information
Taxon OID3300031897 Open in IMG/M
Scaffold IDGa0318520_10022201 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3047
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001239Metagenome / Metatranscriptome740Y
F004912Metagenome / Metatranscriptome419N

Sequences

Protein IDFamilyRBSSequence
Ga0318520_100222011F004912N/AGPGAMSSIALQLSRCWTTSLLVLLVTPSSVVFGEDPSPTVGKYSCSVDNIVGLQTNSQTGTRFAGRIDADAQQKFLVTIEENKQLPEDWCFSADALDDLRKLRRGEKPSTNSKTHFLDPLMFFTACQAQFRLSTNGSPIDSLYHSDNLNIFRDEFSQFWIKNGLSYIWQFHDLKGNAYVAEGKCEKIN
Ga0318520_100222013F001239GGAGGMSSNEAGLLDAVAFIIGGQQEGAIPQGFETHWRRTVHGREIKYQSIGPYVGFGQANDQHRDSRHVRIGVTITSPTKCVFKMVVTTEYSKGANRESFGDATSEVATLDFNKVHRFDIDGDSPNVVIEGTGWMCKQDGCQDIVKIGISAPRQEEARAIESKRHAIDFIKKACPGLPRDR
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