NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318520_10866515

Scaffold Ga0318520_10866515


Overview

Basic Information
Taxon OID3300031897 Open in IMG/M
Scaffold IDGa0318520_10866515 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009548Metagenome / Metatranscriptome316Y
F034997Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0318520_108665151F009548N/AMSTLTQARPATRDGAPTRLLSPPLALTFVAEFSSLTSFFLLLSVLPMLAAAAGASSSGAG
Ga0318520_108665152F034997GAGGMCRGDRLVADFMAGTSIRPGLPAELDEHLTTTVDGLWVVWAHKMARQSGDLFIPLRGGPGYPADARA

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