NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307406_10354131

Scaffold Ga0307406_10354131


Overview

Basic Information
Taxon OID3300031901 Open in IMG/M
Scaffold IDGa0307406_10354131 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024928Metagenome204N
F080641Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0307406_103541312F080641AGGVTVKALADLGQGARGRIVELRLPPGRRTSPTSPLQPGANVYVAEATGGRWLHVRIDYREYSIPLGVAEGVLIELPEREQPPSAADAYAVLVSRLERRSWRVRVIDRASGVVVRSEWFEDEAAARQRHAELAADAAALDAAAFRARYRLP
Ga0307406_103541313F024928N/AEGDHAEWSALWTLGGAGIARVLCATAQSEQAAVTMAELWGQQVGRFERTAPGFQGAVLLREGVKLLAVSCWDGEGTAEAALAPLLDRMAGSDLSSLLAEPPSCRFRTL

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