Scaffold Ga0302322_100407441

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302322_100407441

Scaffold Ga0302322_100407441

Overview

Basic Information
Taxon OID	3300031902 Open in IMG/M
Scaffold ID	Ga0302322_100407441 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1562
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010068	Metagenome / Metatranscriptome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302322_1004074412	F010068	AGGA	MNVKGTFYITTKTAMALAFGDERWNSFMTRLAEKDKYFKNVIMSITLIPVDKLIVIFDEMCKEFYNSDYSQYSMFGKVGARVALSPEGPYKSYLLSKDIKQFVDFALPKLWVTYFDGGVCTTKLENNIVHFKVTGVQIKHYYFEQLLMGYFQQSIKVFGKKSVAKQVRGISSGDEDIYFQYALKDS

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