NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000001

Scaffold Ga0272421_1000001


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000001 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1017083
Total Scaffold Genes1203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)680 (56.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041516Metagenome159Y
F048019Metagenome148Y
F094622Metagenome105Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10000011129F102179GAGMSVHSVSENMSTCSAMHVRSMLLRIMILAVQKTHLDEVHFSKDKISQLESTISKSINIETSTYKDCNVAKKQFNSVAETIDCKQLISHAIVKVLIIHEITYNFSSKFVVELIKILQ
Ga0272421_10000011160F041516N/AMTQKAIHIHEAYNSSLRNHEVIHEKENLSDIEKTLHMSKESILVEDFNLHHFI
Ga0272421_10000011164F094622N/AMSIKQYNFNTFTSKQRVYLNDSNSRDNVTIIMMRMNEELNKRLRRLTLIITHHDELKELVARMKHLTNVTTANQECHEKIYKIYSDSQIFLKTVKVMISTKDQTRL
Ga0272421_10000011199F102179N/AVINEVEKMFVHNVSENMSTYSAMHIKSMLLRIMTLAMQEMHLNKVHFLKDRISQLELTTSRSTDVEMSIHRDCNVAEKQLNSVTETVDCKQLVSRAIIRVLTIHETTYNFSNKFIVKLIKILQQEEKFAVRLRVDKTMSI
Ga0272421_10000011202F048019N/AVNEHAFELFFAQVFVKALQDEFTVYVLVMINIVEKSIIEHQVKTMNNMMSCITNTLKTQILLVELKEYEDVFLTESADKLSLHENHDHAIEITAKSSYESLYNLSNIKLMTLKQYLNDILVKE
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Institute for Fundamental Biomedical Research
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