NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000002

Scaffold Ga0272421_1000002


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000002 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633372
Total Scaffold Genes824 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)494 (59.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F001951Metagenome612Y
F044226Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10000022F001253GAGGVTFIKGAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLTKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLIIRLDQHQMILGKT
Ga0272421_1000002778F001951N/AMTKLKFINSLKNKKDKDKDIVETTVTEVMIFEFKKLLVNVKMLLTLMNKMMNKMKQD
Ga0272421_1000002805F044226N/AMKFSENFNIFLIISMISFYFNKNFHLQMSFNSDMIDYETIYEHFKARKVDNIII
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