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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000003 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 552663 |
| Total Scaffold Genes | 690 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 399 (57.83%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F036035 | Metagenome | 170 | Y |
| F040408 | Metagenome | 161 | Y |
| F058565 | Metagenome | 134 | Y |
| F075494 | Metagenome | 118 | Y |
| F102179 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_10000032 | F036035 | N/A | MKDRMKDDAMQREHHELEKASRNHERDDSNYLNNTLNKHTASISNCDVIEESNERKKK |
| Ga0272421_1000003286 | F040408 | N/A | MYDYKSIFDICIKNDAMKEKVSAAKEHVEMLQDVQNMLMQ |
| Ga0272421_1000003290 | F008668 | N/A | MTSFYFNKNFHSRMSFNSDTTNYETTRERFKARKADDIVIRMKKLLIFDCQQLKKTKQIIEAQINKHKQDVIYEVDN |
| Ga0272421_1000003295 | F006206 | GAGG | LCSQIEVLSKENYFEKSFLINASLIFQSNSFSLRSLIDSDFVVYTLIHDKLVNKVCQKLEIQSILLAKEKLIREYDEKLARKTITHKILLNLTIESHKKLTVSMLIADIEHHEAILSKL |
| Ga0272421_1000003303 | F058565 | AGAAG | MMMNCTNCSNADSKMIASDIDSSQENRDAKLKHSCNDEENVANIIDLLIKISTLKKEKSKDHS |
| Ga0272421_1000003311 | F102179 | N/A | VINEVEKMFAHNVSENTSTCSAMHVKSMLLRIMILAVQEMHLDEVHFLRERISQFESITSRSTDVETLIYKDRNVAEKQLNSVAETVNCKQLVSRAIVRVLTIHETTYNFSSKFVVKLIKILQQEDEFAVKLKAD |
| Ga0272421_1000003342 | F075494 | N/A | VINDVEKTFVHSVSERRYLAKHVKSRSQDEIYCTQVINEVKKMSVHNVNENMSTCSAVHVRSMLLRIMTLTVQETHLNEVHFSRSKIFQFESTTSRSTNVETSTHKDRNVAEKQLNSVAETVDCKQLISCTIVRVLIIHEMTYNFSSKFVVELIKILQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |