Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000015 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000015 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	311632
Total Scaffold Genes	343 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	197 (57.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

311632

Total Scaffold Genes

343 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

197 (57.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F028978	Metagenome	189	Y
F037508	Metagenome	167	Y
F044226	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000015240	F006206	N/A	LCKLNEILSKENYFEKSFLIDAHFISQNRSFSLRSLIDSDSVVYTIIHSNLIDKVCEKLKIQSISLAKEKLIRDYDEKIFKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILNKL
Ga0272421_1000015245	F028978	N/A	MKIADLEEKENDESIYRLILEANRINENCILLREVVLKDKAQYEDTKLRDCRVQNEILYRSDLL
Ga0272421_1000015249	F001253	GAG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFDDHYAKKLITHAIYLNLTVQDHMKRFASMLITRLDQHQMILEKT
Ga0272421_1000015250	F037508	N/A	VISRLEDDADQQTYAKRRVDALSLYQSLSELLKHLKEIYEDQNLIRKCRREYVALKQLNKFFSSFYSEFTKIFSFLNYDDVTLMNDIQNKINNRLQNALSVCLIEFSSLDKLKTFLQDVNNKQQVNYQLRSEQ
Ga0272421_1000015253	F044226	N/A	MMKFSDNFNIFLITSMIFFYFNKEFHSRMSFDSDTTDYETIRERLEVRKADDIVI
Ga0272421_10000154	F006206	GAG	LCSQIEVLLKENYFEKSFLINASLISQSNSFSLRSLIDSDFVVYTLIHDKLVNKVCQKLEIQFILLAKKKLIREYDEKLARKTITHKILLNFTIESHKKLTMSMLIADIKHHEAILSKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000015

Overview

Ecosystem & Geography

Associated Families

Sequences