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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000018 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 292598 |
| Total Scaffold Genes | 300 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 149 (49.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F006206 | Metagenome | 378 | Y |
| F021452 | Metagenome | 218 | Y |
| F025887 | Metagenome | 199 | Y |
| F037508 | Metagenome | 167 | Y |
| F079402 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_100001818 | F001253 | GAG | VTFIKDAMKDVLISSTMSSSNDLFASKSLTTECVLFSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKFKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITRLDQHQMILEKT |
| Ga0272421_100001819 | F037508 | N/A | VIFRLEDDADQQIYAKRRVDAFSFYQSLSKLLKHLKEIYEDQNLIRKCRHEYVALKQLNKLFSSFYSEFTRIFSFLNYDDVILMNDIQNKINNRLQNALSVCLIKFSSLDKLKIFLQDVNNKQRVNYQLRDEQ |
| Ga0272421_1000018281 | F025887 | AGTAG | MIYSYFVSSAYLDFKSFIVDVILSSLEKIFKFFALINIEVTDMTFINESLMSELCECFDIQLILLLKSKLI |
| Ga0272421_1000018286 | F006206 | N/A | LLKENYSEKLFLINAFLISQSNSFSLHSLINSDFVIYMLIHDKLVNKVCQKLEIQSILLAKEKLIREYDEKLARNVITHKILFNLTIKSSKKLTMSMLIVDIKHHEAILSKL |
| Ga0272421_10000186 | F079402 | N/A | MQNKLKMNKNHFSIEEMKIAYVKSRVSETMIKHIAFRMRNMITNSFLEAEEILSIINKMYDDLNQHHTTQRQFLKLY |
| Ga0272421_10000188 | F021452 | GAG | MLISCFINMLDDSFDFKSFIVNVILSSLEKIFRSFALINIEVTDMTFINNSLISELCECFDIQSISLFKLKLIHSYDKILDRRSITHALYISVTIQEHKNEMISLLITHLDQHKIIIDNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |