Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000019 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000019 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	291081
Total Scaffold Genes	297 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	148 (49.83%)
Novel Protein Genes	16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (25.00%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

291081

Total Scaffold Genes

297 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

148 (49.83%)

Novel Protein Genes

16 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F019260	Metagenome	230	Y
F021896	Metagenome	216	Y
F025887	Metagenome	199	Y
F032102	Metagenome	180	Y
F036035	Metagenome	170	Y
F038010	Metagenome	166	N
F058565	Metagenome	134	Y
F061402	Metagenome	131	Y
F070712	Metagenome	122	Y
F081945	Metagenome	113	Y
F102181	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000019104	F036035	N/A	MFQMKDRMKDDAMQREHHELEKAFRNHERDDNDHLNDILDKHTESISDCDVIKESDERER
Ga0272421_1000019111	F019260	N/A	MIQELKSISRINIKSEKYLNSELYIEERKNKLNQFIFELISKLKLNVNHYSTLKFRLLYEYSRLSRNAVAQALLRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISVLRMRNCIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYHVTVQNLFKSKAVIHSVSVIFTVLAYLVKYATFSTGLKATILSSRNLMNLLIINMKKQDSLILEKHQHRMINHLCLYCNKSEHQTAICNSKLKIQL
Ga0272421_1000019112	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHFLLCFSLSEICILQRFDDQSVIFDSITHYALVKLQVSSEELEEIFFYVTQLS
Ga0272421_100001912	F058565	N/A	MTMNCMNCSNADLKMIASNVDSSQENKDVKLKCSCNDEKNVVSIIDLLIKISMLKKKKNKDHS
Ga0272421_1000019144	F006206	GAG	LCKLDEILSKENYFEKSFLIDAYFIFQNRSFSLRSLIDSDSVVYTIIHSNLVDKVCEKLKIQFISLTKEKLIRDYDEKIFKKIITHKILFNLIIESHKKLTVSMLIVDINHHEVILSKL
Ga0272421_1000019146	F081945	N/A	MFSHSSTEERFEEFRNHFFQISDADSTKSSSAVSFIHEDDESFAETIILLVFYEI
Ga0272421_1000019148	F061402	N/A	MTEFVDNNAISSSIEQSAFFLNKNFHSHMSFDSNSTEYEITQARIQASKAENIFEHMK
Ga0272421_1000019151	F025887	N/A	MSDDSFDFKSFTVDVILSSLEKIFRSFALIDTEVTDITFIDESLMSELCECFDIQSISLSKSKLI
Ga0272421_1000019154	F102181	N/A	MREITIIVHVHALYQTLLSCIQSIFVSLILRYVEKLLESRSDDDSDRVRRRMNDEERLIVQDLCNDVSYHCKRLRIQFYIN
Ga0272421_1000019157	F006206	N/A	LCKLDEILSKENYFEKSFLIDAHLISQNRSFSLDSLIDSDSIIYMIIHSNLVDKVCEKLKIQSISLAKEKLIRDYNEKIFKKIITHKILFNLIIESHKKLTVSMLIVDINHHEVILSKL
Ga0272421_1000019164	F070712	GAG	MSDIKEKKFLNKVRKQVIFAEKRDSLNLYRKIKVTTLVDHSKSRDAILTSVKNIDLQTKICFIYHKSDHTSRECSDRTSKVNALENDEFDQFTSNSESDSDSKN
Ga0272421_1000019165	F006206	GAG	LCSQIEVLSKENYFEKSFLINASLISQSNSFSLRSLIDSDFVVYTLIHDKLVDKICQKLEIQSILIAKEKLIRDYDEKLARKTITHKILLNLTIESHRELTVSMLIADIEHHEAILSKL
Ga0272421_1000019169	F021896	N/A	VTKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMNERDNYSTIVIDESFIEVREI
Ga0272421_1000019291	F000597	GAG	MSSFEDSEAKKLETFIKDAMKDVLISSTTSMSDDSFASESLTIECVLSSNEINYSLKSLIDIEAADYSFINEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITHIIYLNLTVQDHTIDTASMLIIRLDQHQMILEKT
Ga0272421_1000019295	F032102	N/A	MKIADLEKNISESIYKQILKTNEIDKNCTLLREAIARDETQYEDIKLKNCRIQNEISYHDSQL
Ga0272421_1000019296	F013598	N/A	MNFIIDLSDSDEYNAILTIICRLSKERHYISCIIDDEDITVEKTAEMLTQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences