Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000022 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000022 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	263926
Total Scaffold Genes	318 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	143 (44.97%)
Novel Protein Genes	16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

263926

Total Scaffold Genes

318 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

143 (44.97%)

Novel Protein Genes

16 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F019260	Metagenome	230	Y
F021216	Metagenome	219	Y
F021896	Metagenome	216	Y
F038010	Metagenome	166	N
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y
F071806	Metagenome	121	Y
F074204	Metagenome	119	Y
F075494	Metagenome	118	Y
F087980	Metagenome	109	Y
F102180	Metagenome	101	Y
F102181	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000022186	F021896	N/A	MKNNLESEDFLKNVKCNLTFLKSDKKYIFSDETSERSSYSTIVIDESSIEVREI
Ga0272421_1000022190	F021216	N/A	MFQMKSRMKSNAMKREHHELEKAFRNHERSDNDHSNNTLNEHTESISSCDVIENSDERER
Ga0272421_1000022192	F102180	GAG	LKRLILIIIHHEKLKELIAKTKHLTDVATENRKCHEKIYKVYNDNQTSLKTVKVIISTKDQTRLQRVQIAHESIQSQEVTLKLH
Ga0272421_1000022216	F048019	N/A	VNEHAFKLFFAQVFAKALQDESTVYALVMINIIKESIVEHQVKAMNNVMSCITNALKTQTLLVELKEYEDVFLIESVNKLLLHEDHDHAIEITAESSYESLYNLSNTELAILRQYLDNVLAKE
Ga0272421_1000022218	F075494	N/A	VINDVEKTFVHSVSEQRYSAKHVESRLQDEIYCTQVINEVEKMSVHSVSENTSMCSAVHVRSMLLRVMTLTVRETHLDEVHFLRSRIFQFESTTSKSTDVETLTHRNHNVAEKQLNSVAETVDCKQLVSHAIIRVLTIHETTYNFSSKFVVKLIKILQQEDEFAVRLRADETTNI
Ga0272421_1000022220	F040408	N/A	MYNYKSIFDICIENDAMKEEVSAAKKHIEMLQDVQNTLMQ
Ga0272421_1000022228	F001951	N/A	MMIIMKLKFIDSSRNKRERDEDTVKTSVTKVMIFELKKLLINAEMLLTLINEMMMKTKQD
Ga0272421_1000022229	F102181	N/A	MKEIMIVIHVHALYQTLLSCIQLIFVFLILKYVKKLLEFKRNEDNDRICKEVNNEERLIVQDLCNDLSYHCKKLRIQLYIN
Ga0272421_1000022272	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHFLLCFSLSEICTLQKFDDQSVVFDSITHYALVKL
Ga0272421_1000022273	F019260	N/A	MIQELKSMSRINIKSEKYLNSELYIEERENKLNQFIFKLISKLKLNANRYSTFEFCLLYEYSRLSKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFNDSDKQEIAQRFISVLRMQNCIFIEYLFDFQQHIDAIEYDIVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLLKSKAVIHSVSVISTVLAYLVKYVTFLTGSKATILSSKNLMNLSIINMKKRGSLTLKKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRVVSLFALAISIDNLAFDTSFVLKKA
Ga0272421_1000022297	F001951	GAG	MTMTKLRFIDSLKDEKERDKDTVKTTVIKIMIFELKELLINAEIFLTLMNETMMKTKQD
Ga0272421_1000022299	F071806	N/A	MKLQSQIIVLDSVQLHLFSIISALLQILVFMNLEIKEFDVEDVKSQLNQDILNLDKDSADIFTQTL
Ga0272421_1000022306	F021896	N/A	VTKNNLESEDFFKNVECNLTFLKSDKKYIFSDETSERDSYSTIVINEFSIEVREI
Ga0272421_1000022310	F074204	N/A	MIVFCILHQAQSKVFILALIDNEVFTYVFMNKFFMQQHHFFLHQLIYSCKLQEFNDQVALIDDITYVVEITMIFNEHIKRLFFYVIELSQYFIIMSLS
Ga0272421_1000022311	F001951	GAG	MMTMMKLKFIDLLKNKKDEDEDIVETTVTEMMIFEFKELLVNAKMFLTLMNEMMMKMK
Ga0272421_1000022313	F087980	N/A	LLHNLLIDDERAVEQFTQSMIENSVEIFCVMQELQNQVQQHDIIISSSFIILNSSIYIELNSQSLAIITQIITQILNNQSSFVIHFSANSVAVFIAFRFKKLLDIFEYERNKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000022

Overview

Ecosystem & Geography

Associated Families

Sequences