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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000025 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 254436 |
| Total Scaffold Genes | 307 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 150 (48.86%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F005901 | Metagenome | 386 | Y |
| F017941 | Metagenome | 237 | Y |
| F036035 | Metagenome | 170 | Y |
| F040408 | Metagenome | 161 | Y |
| F041516 | Metagenome | 159 | Y |
| F048019 | Metagenome | 148 | Y |
| F102179 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_1000025161 | F048019 | N/A | MNEHAFKLFIAEDFAKALQDEFTVYDLVMINVIKESIIEHQVKAMNNVMSRITNAIKTQTLFIKLKEYEDVFLTESADKLSLHEDHDQAIEITAESLYESLYNLSNTELTTLKQYLNNVLAKE |
| Ga0272421_1000025165 | F017941 | N/A | MKIADLKKNISESIYKQVLETNEIDENCTLLREAIARDETQYEDIKLKNC |
| Ga0272421_1000025170 | F000597 | GAGG | VTFIKDAMKNVLISSTMSMSDDSFTSESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFNDHYAKKLITHVIYSNLTVQDHMIDIASILITRLNQHQMILEKT |
| Ga0272421_1000025171 | F005901 | AGAAG | MNDKLIVNVDQFDNETICIVYMLSRLEDDAAEHIYARCRHDSSRSYYSIYKLFEHLKEIYDEVDKNRKCHREYNALRQADKFFNIFYFNFIKLFSYLEYDDRTLMNDLQNKINNRLQNTLSVCLKDFTSLHQLKIFLQDVNSKQRVNYQLRNKRRTVIVKVTVVFDKRATTFLSAEMTSIINYVKSIIFSISESARSSIICYICKISSHLFKNCSQNKINISTFQAFFSRLHEIIISKNKENEKMSFKNNEAKN |
| Ga0272421_1000025172 | F102179 | N/A | VINEVKKISVYSVSENMSTCSAMHVRSMLLRIMILTVQETHLNEVHFSRDRISQFKSTTSRSIDIETLIYKDCNIVEKQFNFVAETVNCKQLVSHAIVRVLTIHEMIYDFSSKFIVELIKILQQEDEFAEKLKANKTMSI |
| Ga0272421_1000025181 | F036035 | N/A | MKNDAMQKDHHELEKASKNHERDNSDYSNDIIDKHTESISDCNVIKESDERERK |
| Ga0272421_1000025187 | F041516 | N/A | MIQKAIHIHEAYNLSLRDHEIIHEKENLSDIEKTLQMSKESILVENFNLHHFT |
| Ga0272421_1000025199 | F040408 | N/A | MYDYESIFDIHIKNDAMKKEVLAAKERVEMLQDMQNMLM |
| Ga0272421_1000025202 | F102179 | N/A | VINEVKKMSVHNISENTSTCSAMHVRSMLLKVMTLTVQEMHLDEVYFLRSRISQFESTTSRSTDVETLIHKDHNVAEKQLNFVAETVDCKQLVSRAIVRVLTIHEMIYNFSSKFIVELIKILQQEDEFAVRLRADETTSI |
| Ga0272421_1000025204 | F048019 | N/A | VNDHAFELFFAQVFAKALQNESTVYAFVMINVVKESIVEHQVKAMNNVTSCITNALETQTLLIKLKEYKDVFLIESVDKLLLHEDHDHAIEITAESLYESLYNLLNTELATLKQYLDDVLTKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |