Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000042 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000042 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	214107
Total Scaffold Genes	245 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	121 (49.39%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (7.14%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

214107

Total Scaffold Genes

245 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

121 (49.39%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (7.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F019260	Metagenome	230	Y
F021216	Metagenome	219	Y
F021452	Metagenome	218	Y
F021896	Metagenome	216	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F038010	Metagenome	166	N
F041516	Metagenome	159	Y
F061401	Metagenome	131	Y
F081945	Metagenome	113	Y
F087980	Metagenome	109	Y
F096306	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000042118	F021452	GAG	MLISCFINMLDDSFDFKSFIVDVILNSLEKIFQFLALIDIEVTDMTFIDDSLISELCERFDIQSISLFKSKSIHSYDEIFDQRSITHALYISVTIQEHKNEMMFLLITRLDQHKIIVDNL
Ga0272421_1000042124	F061401	N/A	LNNDQRVIREIKNKIKRVDNLSKTIFHKATIVTQSVDHSKSDQLKSRDAILTSVKEAEILVESCFICHKSDHSSKECLDRFTRINVVNNEYDCFDFDSNFNSKN
Ga0272421_1000042126	F081945	N/A	MLSHSFTEEHFEEFRNRFSQISDADSSKSSSVASFIQKDDESFIEMIILLMFYEI
Ga0272421_1000042127	F036036	N/A	MLVSLIHHLFSCFDQSFTSEDQCLVHLFRYILDLIDLQAFASAFILDDVRVEVYTRMKDLVHEEESQEDD
Ga0272421_1000042129	F032102	N/A	MKIADLEKNISESIYKQILETNEIDENCTLLREAIAKDETQYEDIKLKNCRTQNEILYHDSQL
Ga0272421_1000042133	F000597	N/A	MKDVLISSTMSMSDDSFASESLTIECILSSNKISYSLKSLIDIKAADYSFIDKVIAQIVCDQLQIESLTLIKAKSIQEFDDYYAKKLIIHVIYSNLTVQDHIIDTASMLIT
Ga0272421_1000042134	F005901	N/A	VISRLEDDAAEHIFARHRHDASHSYISIDELFEHLKEIYDKLNKNRKCRREYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLMNNLQNKINNRLQNNLSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCIVIIKVTVVSDKRVTSLSVTTSIIDYVKSTISSISESARSSIICYICKTLNHLFKNCSQLNKIDTSASHAFTLRLHEIIISKNKKNKKMSFENSKTKN
Ga0272421_1000042139	F021896	N/A	MKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMNEQDSYSTIVINESSIEVRKI
Ga0272421_1000042145	F087980	N/A	MKSLHNLLINDERAVEQFTQSVIENSVEIFRVMQELQNQVQQHDVITSSSFIVFNSSVYIKLNSQSLAMIAQIVAQILNNQSFFIVHLSANSVAVFIASKFKKLSDIFKYERNKDQLNA
Ga0272421_1000042234	F096306	N/A	MFAMYNNYAVDSLIIDDNSNDERSCKDNSELHASMILFNIMILIVTNVKIIFVESNDK
Ga0272421_1000042236	F021216	N/A	MKSRMKSNAMRKEHHELKKALRNHECNDDDHSNDILNEHTESILSCDIIKESNERKRK
Ga0272421_1000042242	F041516	N/A	MLQTLTDDTQTTQKAIHIHEAYNSSLRDHKVIHEKENLSNIEKMLHMLKECILVKDFNLHHLT
Ga0272421_10000425	F019260	N/A	MIQELKSMSRIDIKSEKYSNLELYIEEREDKLNQFIFELISKLKLNANRYSTFEFCLLYEYSRLSRNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNRIFIKYLFDFQQHIDAIEYDVVIRKFNLKNELFSKLKALLIQMNVSSLNYEQLIIKCQQLNSQYRVTVQNLLKSKAVIHSVSVTSTVLAYFVKYATFSTGSKATISSSGNFMNLSIVNMKKRDSLILEKHQHHMINHLCLYCDKSEHQTAICNSKLKIQLQVVLLFVLAIFIDNLAFDTSFALRKV
Ga0272421_10000426	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHSLLCFSLSEICTLQKFDDQSVVFNSITHYALVKLRVSSEKLEETLFYVTQLSQFSVVLDLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000042

Overview

Ecosystem & Geography

Associated Families

Sequences