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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000044 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 211686 |
| Total Scaffold Genes | 245 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 143 (58.37%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F013598 | Metagenome | 269 | Y |
| F021896 | Metagenome | 216 | Y |
| F032102 | Metagenome | 180 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_100004412 | F000597 | N/A | MKDVLISSTTSRSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITYVIYSNLTVQDHTIDTASMLIT |
| Ga0272421_100004414 | F006206 | GAG | LCKLDEILSKENYFEKSFLIDAHLISQNRSFSLRSLIDSDSVVYTIIHSNLVDKVCEKLEIQSISLAKEKLIRGYDEKIFKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKL |
| Ga0272421_100004418 | F008668 | N/A | MIFFYFNKEFHSRMSFDSDTTDYETTCERLEARKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHKRDVIYEVDD |
| Ga0272421_100004419 | F001951 | N/A | MIMTKLKFINSLRNEKEKDEDIVETTVTEMMIFEFKKLLVNAEMLLTLMNEMMMKTKQD |
| Ga0272421_100004426 | F021896 | N/A | VTKNNLRSEDFLKNVECNLTFLRSNKEYIFSDKMSERDSYFTIVINESFIEVREI |
| Ga0272421_100004428 | F001951 | N/A | MMTVTKLRFIDSLKNEKERDEDTVKTTVTEMMIFELKELLVNAKMLLTLTNETIMKTK |
| Ga0272421_10000448 | F013598 | N/A | MNFIINLSDSSEYNAILTIICRLSKERHYISCITDDEDITVEKTAEMLIQ |
| Ga0272421_10000449 | F032102 | N/A | MKIADLKENISESIYKQVLETNRIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDSQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |