NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000046

Scaffold Ga0272421_1000046


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000046 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)205754
Total Scaffold Genes238 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (57.14%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008668Metagenome329Y
F021896Metagenome216Y
F025887Metagenome199Y
F040408Metagenome161Y
F055319Metagenome138Y
F061401Metagenome131Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100004610F055319AGCAGMIEVRVKRLRLVDKMIYIQISERNLAQKLNFSCKQRDFFIYTDNITVINVHDMQSEELLI
Ga0272421_100004613F021896N/AMTKNNLESEDFFKNVECNLTFLKSDKEYIFSDETSERDSYSTIVINESFIKVREI
Ga0272421_1000046229F021896N/AMKNNLESEDFLKNVECNLTFLKSDKEYIFFDEMSERDNYFTIFINKSFIKVREI
Ga0272421_100004623F040408N/AMYDYESIFDICIENDVMKEEVSAAKEHVEMLQDVQNTLMQ
Ga0272421_1000046230F001951N/AMMIITKLRFIDSSRNEREKNEDTVEITVTKVMIFELKELLIDAEMFLTLTNEMMMKIICD
Ga0272421_1000046234F008668GAGMSFNLNTTNYETIRERIEARKVNDIIMQMKELLSFDCQQLKKMKQIIEAQINKHR
Ga0272421_1000046236F061401N/ALNNDQRVIQKIKNKIKCVNDVSKTIFYRATVITQQSFNHLKSDHLKSRDAILTSIKETDFLVETCFICYKSDHSSKKCSDRPARINAVNNKYDQFDFDFDSNFDLKN
Ga0272421_10000465F025887N/AVTENNVLIFCFISMSDDSFNFKSFIVDVILNSLRKIFKFLTLINIKVIDMTFTNESLMSKLCECFDI
Ga0272421_10000466F087980N/AMIENSVEIFHVMQELQNQVQQHNVIISSLFIIFSSSVYIELNSQSLTTIAQIITQILNNQFFLVVHLSANFVAVFIASKFKKLLDIFKYERNKD
Ga0272421_10000469F001951N/AMMIMMKFKFINSLRNKKERDEDTVEITVTEIMIFEFKELLVDAKIFLTLMNEMMMKIK
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