NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000056

Scaffold Ga0272421_1000056


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000056 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)180864
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)110 (52.63%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F021896Metagenome216Y
F032102Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100005611F032102N/AMKIADLEKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNYQTQNKILYHDNQL
Ga0272421_100005616F000597GAGGVTFIKDVMKDVLISSTMSMSDDSFASESLTTECVLSSKEISYSLKSLIDIEAADYSFIDEVIAQIVSDQLQIESLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDHMIDIASMLITRLDQHQMILEKT
Ga0272421_10000567F021896N/AMTKNNLESEDFLKNVECNLTFLRSDKEYIFSDETSERSSYSTIVIDESSIEVREI
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