NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000066

Scaffold Ga0272421_1000066


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000066 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)165168
Total Scaffold Genes199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (57.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019260Metagenome230Y
F038010Metagenome166N
F061402Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100006612F061402N/AMTEFIDNNAISSSIEQSMFFLNKHFHSHISFDLNSTEYEIIQARIEADKAENIFKHMK
Ga0272421_10000666F038010N/AMNNDHLMLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHSLFCFSLSEICTLQKFDDQSVVFNSITHYALVKLRVSSKKLEETLFYVTQLSQFSVVLDLL
Ga0272421_10000667F019260N/AMIQELKSMSRIDIKSEKYSNSELYIEERENKLNQFIFELISKLKLNVNRYSTLESRLLYEYSRLSRNAVAQALSRMTAQHDKLVTVEQLIVLLRQVFDDSDKQEIAQRFISALRMQNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIYFVSVISTVFAYLVKYATFSTDSKATILSSKNLMNLSIINMKKQDSLTLEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRVISLFVFAISIDNLAFDTSLALRKV
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