NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000076

Scaffold Ga0272421_1000076


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000076 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)156600
Total Scaffold Genes193 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)118 (61.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F021216Metagenome219Y
F025887Metagenome199Y
F028978Metagenome189Y
F041516Metagenome159Y
F069514Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_1000076181F001253GAGGVTFIKGAMKDVLISSTTSSSNDLFASKPLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLPLTKLKSIREFDDHYAKKFITHAIYSNLTVQDHMKRSASMLITRLDQHQMILGKT
Ga0272421_1000076184F028978N/AMKIADLEEKENDESIYRLILEANRINENCILLREVVLKDEAQYEDTKLRDCRVQNEILYRSDLL
Ga0272421_1000076185F069514N/AMQNDWAKLLFMIEFVDNNALFSVISSIPFFLNKDFHSRMSFEPDVIEYESSRERLQTTKAENISELLEASIERVI
Ga0272421_1000076188F025887AGGVTENDILIFCFISMSDYSFDFKSFTVDVILNSLEKIFRFLALIDIEVIDMTFIDESLMSKLCEHC
Ga0272421_10000765F021216N/AMFQMKSRMKSNAMRRKHHELEKTLRNHERNDDDHLNDILNEHTESISSCDIIKESNERKR
Ga0272421_10000769F041516N/AMIMLQTLTDNTQIIQKVIHIHEAYNLSLRNHEVIHEKESLSDIEKTLHMSKECVLVKDFNLHHFI
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Institute for Fundamental Biomedical Research
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