NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272421_1000089

Scaffold Ga0272421_1000089


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000089 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)138229
Total Scaffold Genes158 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (27.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008668Metagenome329Y
F021896Metagenome216Y
F055319Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100008910F055319N/AMRRLRLVNKMIYIQISERDLAQKLNFFHRQQDFFIYTDDITVVDVHDMQSEELLI
Ga0272421_100008914F021896N/AMKNNLESEDFLKNVECNLTFLKSDKEYIFSDKMNERSSYSTIVINESSIKVREI
Ga0272421_10000897F008668N/AMIEFSENFNIFSIISMTSFYFNKNFHSRMSFNSDTTDYETTRERLEARKADNIIIQMKELFIFDRQQLKKMKQIIEAQINKHRRDVIYEVDD
Ga0272421_10000898F001951N/AMTKLKFIDSSKDEKERDEDTVETTVTKVMIFEFKELLVNAETFLTLMNKMMIKMK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.