Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000094 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000094 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	136110
Total Scaffold Genes	141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (19.15%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

136110

Total Scaffold Genes

141 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (19.15%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021216	Metagenome	219	Y
F038008	Metagenome	166	Y
F050043	Metagenome	145	Y
F061399	Metagenome	131	Y
F074202	Metagenome	119	Y
F075494	Metagenome	118	Y
F087979	Metagenome	109	Y
F089603	Metagenome	108	Y
F096306	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000094106	F096306	N/A	MFAMYDNRAVNSLIVDDDSNKERSCRDNSELHTSMILFNIVTLIATNVKIVFVELNDK
Ga0272421_1000094139	F087979	N/A	MKEKNESSTFIYMNXVESRLDSSFIDLRLQKFMHMIEMIEMIETKLLRLN
Ga0272421_100009438	F074202	N/A	MKLXNFKMCMYEXSLFTCXKEIYMYVEKCLXLLYCXLRSQSLFLTKLLEKCVSNFMKTVDCKINCKINCKINCKTIYMSFLLMSSCLLCSDNAFNLALLLNDDFFLKLVISKLRLHVETELDFKEEVILRCSFFTAKDDDLDSSFNLETAMNFIKFLXFIIFHNNXLFFFNLFLSVKCDVTQSKXVDAENRAFESEVVVDLAVLSNVNNVSFSKFENLNYEDVMKRLILIESSFFSSDIV
Ga0272421_100009450	F089603	AGG	MYTDASQIRKKTAEVETEIETTVIFTHELVRCSKATSVSGKIITKAKLQAISDAIAMCSEKALKNSEI
Ga0272421_100009457	F001951	N/A	MMIMIKLRFIDSSRNERERDENTVKTTVIKMIIFELKELLVDAKMLLTLMNETMMKTKQD
Ga0272421_100009463	F061399	N/A	LHLLLIFERCXRDIFMNYVDFLSLSIFMSITYKYILIFIDHLIKMRHLVLITFMKVEKVINCFYAYVXKHYDLLKFFVSDXDTQFIFNVXKHMCKMLKINVKLSIMYHSKINDQIKKINVIMKHYLQVFINYMQNDXTKXLSEVKFIISNTLSLITLTSFFLINLSQNSRLDFKFSESLLENLTFQAXNKLINVKRFIKKMKKLTKHLCNEMFITQIIYKFNVNLFYRSCFKYFVENKFXLNAHNLNITHFIVKLNDHNVDFFKIKHIFKNNSLIIELNLSTFMKIHLVFHVILLNHITSDFLSSQRQKSXEFIIIKNDKRFXYVNSILNFKHDKCYNLSLLKYYIDXEDYFSTXEFFHLLNNCE
Ga0272421_100009468	F021216	N/A	MKSRMKSNAMRREHHELEKAFRNHERSDDDHSNDTLNEHTESILSCDVIKESDEREKK
Ga0272421_10000947	F021216	N/A	MKSKMKSNAIRREHHELEKAFRNRERSDDNHSNDTLNEHTELILSCDVIKESDKKENK
Ga0272421_100009478	F050043	N/A	MIKIXSXLKKNEVEENEKLKETERAINKSTIIIHFCLCFIVSTISFTXKINNVYVLFTHHHCCHLHQLHIIYTIYNVIYTHYNRRRIIIQSKVSLFLIFLQRFEEFYQELLEXINECTSLFIKVNKDINYXDREXIHLEEKTIVMMNXLIKSKTESKIRSELALKLYDFVKISFRLHHIFNLICHELCCVQLDNAX
Ga0272421_100009481	F075494	N/A	VINDVEKTFVHNVSERRYSTKHVKSRSQDEIYCTQVINEVKKMSIHNVNENTSMCSAMHVRSMLLKVMTLTVQKTHLDEVHFLRDKIFQFKSTTSRSKNIEMLTYRNCNVVEKQLNFVIETVDCKQLISRAIVRVLTIHEMTYNFSSKFIVELIKILQQEDEFAVRLKADETTSI
Ga0272421_100009495	F038008	N/A	MMILXSELLKIVIVANKKMSINQHCLDTFMLKQKVYLNDSNSRKNVTMIAMKINXELNKRLRKSTLIITHHEELKELIARAKHLANVMTENQEYHKKIYKVYSDSQTSLKTMKVMISTKDQTRLQXVQIMHESIQSXKVTLKLYXVIKHAEVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000094

Overview

Ecosystem & Geography

Associated Families

Sequences