NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000095

Scaffold Ga0272421_1000095


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000095 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)135257
Total Scaffold Genes169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (53.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F019260Metagenome230Y
F021896Metagenome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_1000095142F019260N/AMIQELKSISRINIKSEKYSNSELYIEERENKLNQFIFELISKLKLNANRYSTFESRLLYEYSRLSRNAVAQALSRITAQHDKLVTIEQLVALLRQVFDDSDKQEIAQQFISALRMRNRIFIEYLFDFQQHIDAIEYDVVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATLSAGLKATISSLKNLMNLSIVNMKKRGSLTFEKHQHRMINHLCLYCDKPEHQTAICNSKLKVQLRAVSLFALAISIDNLAFDTSLALEKA
Ga0272421_1000095149F021896N/AMMKNNLESQDFLKNVECNLTFLKSDKEYIFSDEMSERDNYSIIVINKSFIEVREI
Ga0272421_1000095154F001951N/AMTMTKFKFIDSLKDERERNEDTVKTTVTEMMIFELKELLVDAEMFLTLMNKIMMKMK
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