Scaffold Ga0272421

Basic Information
Taxon OID	3300031909 Open in IMG/M
Scaffold ID	Ga0272421_1000098 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031909 Open in IMG/M

Scaffold ID

Ga0272421_1000098 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	133527
Total Scaffold Genes	141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (27.66%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

133527

Total Scaffold Genes

141 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (27.66%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F004755	Metagenome	424	Y
F009377	Metagenome	318	Y
F019260	Metagenome	230	Y
F028368	Metagenome	191	Y
F075494	Metagenome	118	Y
F076668	Metagenome	117	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272421_1000098140	F019260	N/A	MSQFENISNTLSSTSLVSINELITVAQFRTHVNNAFEAXYTFLIELQTXFNDIITQYINXVSVCQQEHEQTQIELKQSQINNEILSEMIQELKSMSRINIKSEKYSNSELYIKERENKLNQFIFKLISKLKLNVNHYSTLESRLLYEYSRLSRNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEITQRFISALRMRNCIFIEYLFDFQQHIDAIEYDVVTRKFNLKNKLFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYFVKYATFSTDSKATISSSRNFMNLSIVNMKKRDSLTLEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLRIISLFALAISINNLAFNTSFILRKV
Ga0272421_100009822	F075494	GAG	MFIHNVSEQKYSAKHVKSKSQDEIYCTXVINEVEKMFAHSINENTSMCSAMHVKSMLLRIMILAVQETHLNEVHFLKDRISQFKSTTSRSTNVETSTHKDCNVTEKQLNSVAETVNCKQLVSHAIVKVLTIHETTYNFSSKFIVELIKIL
Ga0272421_100009832	F076668	N/A	MTCLLPTSSFLTHASARKMSKSSMHLTDHYAIKETSVFKSTTTTKKIMHMSNALFTDILMLCNRKDATNQTLLRCVKFENIRRSQKISFSKXSLKDXLKRLCMIMLERTCYNMIFAFSVLSXVLFKKSLKTLCASLXKVSALLFRIITFVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVK
Ga0272421_10000984	F004755	N/A	LKELTQLFNDLNKKVNFRREYYNLIQRFKKFNEFYTQFQRLSFYLDYHKKQLIVDLKDKIHSRLQFIXVNQLVQSDSLKEIRFYLIYLNNNQRVIXKIKNKIKRVNDFSKTIFHRATVITQSVDHSKSDQLKSRDAILTSVKEADILIESCFICHKSDHSSKECLDRSTRINAVNNEYDRFDFDSNFDSKN
Ga0272421_100009861	F009377	N/A	MTRSTESESVSIAHYDFQNVRRESLLSQNRAASEEEDTNASLNTEKENTNALLFDHEMIKISINTELNAXINAHEANDIVIFIKYICQQHDIEIKIHNDMIQMLEDVNEINITLKITQTHLQKENKDKNVIIHHLKVASSRQSTSISEDYFSKLIKLLNSSLFEDSTQNVDNXLSXMXNKLKTNKNHFSIEELKITYIESXVSEAAVTILATHLCW
Ga0272421_100009863	F028368	N/A	MIIHSNLVDKVCKKLRIQSILLTKEKLIRNYDEKISKKIITHKILFNLIIESHKKLTVSMLIADINHHEVILSKLXINKNEILLNMQNDVIVFSNQLNTFISIFSISLNSKHSSXSRSSLFSSIIQTKISMMLKXLVQEESFLIRSIDAASFKTLLNRSKRNKIKVFALFMTNINKEITYNIQCNLNVLNVSSINEITQNLKDIKAKLSL
Ga0272421_10000988	F000597	GAGG	VTFIKNMMKNVLISLMMSMSNDSFASESLTTEYVLSSNEISYSLKSLMNIEAADYSFIDEVTAQIVCNQLQIELLTLIKAKSIQEFNNHYVKKLITHVIYLNLTIQDHTVDTAFILITQLKQHQMILEKTXMNKINLVINM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272421_1000098

Overview

Ecosystem & Geography

Associated Families

Sequences