NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272421_1000103

Scaffold Ga0272421_1000103


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000103 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129410
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (53.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F038010Metagenome166N
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_1000103137F086377GAGLILDYDNVQILIVHAEAKFFFKFLDEENRDDRLRATDLNEIFAQILIQIMIKF
Ga0272421_1000103144F038010N/AMNNDHLVLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHSLLCFSLSEICTLQKFDDQSVVFNSITHYALVKLRVSSEKLEETFFYVTQLSQFSVVLDLL
Ga0272421_10001033F000597N/AMKDVLISSTMSRSDDSFASEFLIIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIREFDDHYAKKLIIHVIYSNLTVQDHTINTASMLIIQLDQHQMILEKT
Ga0272421_10001034F005901N/AVISRLEDDAAEHIFVRCQHDASHSYISIDELFEHLKEIYDELNKNRKCRREYNALRQADKSFNVFYFDFMKLFNYLKYDDRILMNDLQNKINNRLQNALSVCSENFTSLIRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPDKCATSLSVTTSIIDYVKSIISSTSESARSSIICYICKTFDHLFKNCS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.