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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000147 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 98443 |
| Total Scaffold Genes | 104 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (30.77%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F061399 | Metagenome | 131 | Y |
| F074203 | Metagenome | 119 | Y |
| F086375 | Metagenome | 110 | Y |
| F096306 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_10001471 | F008735 | N/A | MREIMIIVHVHALYQTLLSCIQSIFVLLILKYVEKLLEFRSNEDSDKICREMNDEKRLIVQDLCNDLSYYYKRLRIQFYIDXKTENDEXRXNNNIMLSNLILKLMHYVKDFNXIFNHTLSELFNSTLIVDQEIVRXLHLSKKVTRQDFNIXKCCRKCKSFIMSKTELN |
| Ga0272421_100014710 | F086375 | N/A | MFTLFINSKSITSXNHGENXFNEIKEHYKRHNNNHVALFKXLHKLKLFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ |
| Ga0272421_100014720 | F061399 | N/A | MSIIYKYVLIFVDHFIKMKHLVLTTFMKVEEVINYFYAHVXKYHNLLKFFISDXATQFIFNVXKHMCKMLKINVKLSMMYHFEIDDQIKRVNAVMKHYFQVFVNYMQNDXVKXLSKVEFIINNTSLLITLTSFFLINSSQNSCLNFESFESLFKNLMFQAXDKLINVKKFIKKMKKLTKHLRDEMLIAQIIYEFNVNLSCRSCFKYFVEDEVXLNACNLSIAHLAVKLDDYNVDFFKIKRVFENNFLIIKLDFSTFMKIHSVFHVTLLNHITSDFLLNQRQKSQELIVIKNDKRFXYVNS |
| Ga0272421_10001474 | F009580 | N/A | MIEVRMKRLRLVNKMICIQISECNLTQRLNFSYEQQDFFIYTDDITVVNVHDMQSKKLFIXAFFNNFTQMLQFAVVAQLSLIADFLDLRNDQSLILNDDNNKV |
| Ga0272421_100014784 | F002432 | N/A | MXKSLCKRLRITASLFTVYHSEIDDQSKRVNQNVERELRIYCNYMQNDXVKXISMMKFSDNFNIFLITSMILFYFNKEFHSXMSFNSDMTNYKTTHERLEARKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFRNVKTTRLRKDLKDKQLNLYQITVKVSIFYHLHLSVSMKYLHSMFSLKLLQLYSEDFLSKQHLESLKSITIKDDEHXEINDILNFRCYRDRIQYKVKXTDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSNKSR |
| Ga0272421_100014788 | F074203 | N/A | MSSHSFTEERFKEFRNHFSQISDADSLKSRTKSSSAASFIHEDNELFAETIILFMFYEIXKTXSLALDEETDQLYELDKQQEDEIKELKTRLQAKEITSSDSIYSERSRFQKIPDSSLFTDEKNSTXKNXYRKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAEITQARCKRDCVNLYRIVDDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQHLSFYLDYHEK |
| Ga0272421_100014799 | F096306 | GAG | MYDNRAVDSLIVDNDSNEERSCKDNSELYASMILFDIATLIATNVKIVFVESNDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |