NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272421_1000159

Scaffold Ga0272421_1000159


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000159 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)94110
Total Scaffold Genes102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (58.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F055319Metagenome138Y
F069514Metagenome123Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10001591F069514GAGMIEFVDNNALFSVIFSTSFFLNKDFHSRMSFELNVIEYESSHERLQMTKVENILKNMNKTLKFAHKSLVKT
Ga0272421_1000159100F087980N/AMKSSHNLLIDDERAVEQFAQSMIENSVEIFRAMRELQNQVRQHDVIILFSFIILNSSVYIELNSQSFVMIAQIIAQILNNQSLFIVHFSANSVAVFIASRFKKLLDISEYERNKDRLNA
Ga0272421_1000159101F001951N/AMMIMMKLKFIDSSRNERERDEDTVETTVTKVMIFEFKELLVDAEMLLTLTNEMMMKMKQD
Ga0272421_1000159102F055319AGCAGMIEVRVKRLRLVDKMICIQISEHDLVQRLNFSCEQRDFFIYIDDVIVVDVHDTQSEELLI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.