NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000221

Scaffold Ga0272421_1000221


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000221 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67783
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (20.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008115Metagenome338Y
F104132Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10002213F104132AGAAGMNEILNSXIKNSQLEYLIKXTEIEENSXVKFANVMNIIKVMNVYHARNFDRSSKNSXIAYVQESSDSEYESEN
Ga0272421_100022162F008115N/AMLXNVYRLHDLSSSIVLNRNFQFISIMXQSLCKXLRITASLSTVYHFEINDQLKXVNQDVERELRIYCNYMQNDXAKXLFMMKFSENFNIFSIISMTSFYFNKDFHSRISINSDTTDYKITCKRLEAKKANDIIIXMKELLIFDHQQLKKTKQNIKAQINKHKXDVIYEVNDXIXLFFRNIKTIKSCKNLKDKQLKLYQITVKVEIFYHLHLLISMKQLHLIFSSKLLCSYLNNFLSEQHSELFKSFTIENNEHXEINDILNSRCYQD
Ga0272421_100022172F104132AGAAGMNEILNSRIKNSQLEYLIKXTEIEENSXVKFANVMNVIKVMNVYHARNFDRSSKNSXIAYVQESSDSEYESEN
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