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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000240 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 61993 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (22.58%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F006206 | Metagenome | 378 | Y |
| F009580 | Metagenome | 315 | Y |
| F035571 | Metagenome | 171 | Y |
| F048018 | Metagenome | 148 | Y |
| F070710 | Metagenome | 122 | Y |
| F087979 | Metagenome | 109 | Y |
| F089602 | Metagenome | 108 | Y |
| F094625 | Metagenome | 105 | Y |
| F104134 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_10002401 | F070710 | N/A | VRKTLDDXKHTKSLFIAESTTAMNNFMMKQSFLQILQYNIRKSLKIQELFLINKEVREFNIVAIQKQDRNNNDSQSFNSAHNFFYLVKNSSSQSRTCIYINKHLRFNQXIVETAESDICSIRILTRNVNDETQTLKLLNIHNSCSLFITFTEKSSIISCLNKLLKNDCK |
| Ga0272421_100024016 | F035571 | GAG | MTXLTFIKXACISSHACLISCIQSLTQLRSVILFCSMFRXTCSRLVYVSVFKVSMLTLLNASATXHRVXFXSVFNLHSLLNSSSFLSCXCQTDASNAISDLTTAEYTCLAFVKIAFHVKTSKXLSVSILVTXFIFICXRCTLHCSFMFSCIFRICTSDFNLITEFSIYMLVIMLNLFDFLVKCVSSYFSDMNVASXVQAHFAQTLCALLSVLQISSVNLL |
| Ga0272421_100024019 | F006206 | N/A | LYNLNKILLKEIYFKKSFLINAALIFQSNSFSLQSLIDSDFAVYMLIHIRLVNKVCKKLKIQFILLIKEKLIQDYNEKLFKKVITYKILLNLTIESHKKLIMSMLIIDIEHHEAI |
| Ga0272421_100024034 | F094625 | N/A | MKSSHNLLINDECVVEQFTQSVIENSVEIFHAMQELQNQVQQHDVIILFSFIVFSSSIYIELNSQSFVIIAQIIAQILNNQSLFIIHSSANSVAVFITFRFKKLLDISEYEKNKDXLNAXKQSLIQHMNMNDDHYFSHRVKIIYVKSXLIIDKKAHNLMSQYXINDLCIIFIFTDXQHKLHHCCNNSFKTEDAHLYLHETLK |
| Ga0272421_100024035 | F089602 | N/A | MKDEXSNFIKISSEENNDLSEIIDIALQTVNQXEIFHQRTFFLLIKKIVVVDKVIHVLLQSFMKI |
| Ga0272421_100024036 | F001951 | N/A | MKLKFIDSSRNKRERNKDTVETTVTEMMIFELKELLINTETFLTLMNEMMTKMKQD |
| Ga0272421_100024037 | F009580 | N/A | MIEVRMKRLKLVDKMICIQISERNLAQKLNFSYRQXDFFIYIDDIIVVNVHDMRSEKLFIXAFFSNFAXMLQLAIVAQLSLVADFLDFRNDQSLILNDDNNEA |
| Ga0272421_10002404 | F104134 | N/A | MIRFLXSVNMLAILCKICSINFFCISFISLLFIILIMTFHFLQSDNRLFLKHYFLIIISSLVTFIHDVIFIERRVLFCVCNCLLSSXTDVFNFCTFFVMNAFXFAXCFSSESSXRRWISFNAISFHEXFLLFSFFNVDIFINKSIMLITFSSLLHKCFNFASLFSCDKSTSLAIIFESALLQFMQFIVIQSSSKFTLSCL |
| Ga0272421_100024042 | F048018 | GAG | MIQRRSLSELSMYFLSXKYRXFSCSLHSTKKILLXCHTLLQSASIIXAANLSLISTYFHNVXVRMLTESSSRFKVSXFSXDLMFSTLNSSISRFMKVKICKSAEVIENRCNXTESRMMICDXSFMTLMSKISRTRFSTILRSKTXVFRIVXCXYXCQELNVFFFLKRSSEXCVKVFNLSLILLKX |
| Ga0272421_100024048 | F087979 | N/A | VKEKNESSTSIYMNXAESKLNNSFIDLRLQKSAHMTEMIKTELLKLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |