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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031909 Open in IMG/M |
| Scaffold ID | Ga0272421_1000338 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41882 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (18.87%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F023763 | Metagenome | 208 | Y |
| F044227 | Metagenome | 154 | Y |
| F052973 | Metagenome | 141 | Y |
| F055318 | Metagenome | 138 | Y |
| F071806 | Metagenome | 121 | Y |
| F086377 | Metagenome | 110 | Y |
| F104132 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272421_100033812 | F055318 | N/A | MLRDDEALCVDRMQSFHDRADFDNLNVHVTSNLYADEKVK |
| Ga0272421_100033815 | F044227 | N/A | LRTKLSDSEACTHALLKLNASAIESAMQCQLLELLNNRCDHERSQSSSENDDENKASKAI |
| Ga0272421_100033819 | F009580 | N/A | MRRLRLVDKMICIQISERDLAQKLNFFHRQXDFFIYTDDITVVDIHDTQSEEFLIXTFFSDFARMLQLAIVAQLSLVANFLDFRNDQNLILNDDNDEA |
| Ga0272421_100033844 | F071806 | N/A | MKLQSQIIALNSVQLHLFLIISALLQILALMNLEIEEFDVENIKSQLNQDTLNLDEDSADTLTQTLXK |
| Ga0272421_100033845 | F023763 | N/A | MISDVIVKSRQKLTSMSLMMTQLLNXHEILKIFVIRDHLNRINKVFKLXSSFSESANNDHKFFIVDLVITLNXVMLLRKVSNXMKNLILIVLKENVFEHIVQSINFYHNLVIXIIMMKNNLKREDFLKNVECNLTFLRSDKEYIFSDEMSERNSYSTIVINESFIEVREI |
| Ga0272421_100033847 | F086377 | N/A | MIQHFXDQRQRISILDCDSVQTSIVHAEVKFFFKFLNEENKDDHLRVTDLNEIFAQILIQITTKF |
| Ga0272421_10003385 | F052973 | N/A | MFRDCARPERDVFVTREECDVGEQGVGERKGCWERKRVLSHI |
| Ga0272421_100033852 | F008735 | N/A | MREIMIIIHVHTLYQTLLSCIQSIFVFLIFKYVKKLFESRSNEDSNRVCREVNDKKRLIVQDLCDDLSYHHKKLRIQLYINXRIENNEXEXDDNIMLLNLILKLSYYAKNLNXIFDHTLSELFNSTLIIDXEIVRXLHLSKRVTRRDFNVXKRCRKCRSFIMSKTELD |
| Ga0272421_10003387 | F104132 | AGAAG | MNEILNFXVKNSQLKYLIKXTEIEENSXIKFANVMNVIKVMNVYHVXNFDRSNKNSXITYVQESNDSEYESKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |