NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000355

Scaffold Ga0272421_1000355


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000355 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39533
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (56.10%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100035539F025887AGTAGMLIFCFINMLDDLFDFKSFIINIILNSLEKIFRFLVLIDIEVIDMMFIDDSLISKLCERFDIQSISLFKSKLIHSYDKILD
Ga0272421_100035540F079402N/AMRNKLKMNKNHFSIKEMKIAYVKSRVSETMIKHIALRMRNMITNSFLEAKEILSIINKMYDDLN

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