NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000410

Scaffold Ga0272421_1000410


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000410 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34308
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (38.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100041036F087980N/AMKQSHRSSIDDKRAVEQFAQNVIENSVEIFRVMRELQNQVRQHDVIISFSFIVSSSSVYQELNSQSLAMITQIIAQILHNQSLLVVQVFANSIAVSTLIKFEKLFDISEYEKNKD
Ga0272421_100041037F001951N/AMMTMMKLRFIDSSKDEKERDEDIVETIVTEVMIFELKELLVDAKMFLTLMSETMTKTK
Ga0272421_100041038F055319AGCAGMIEVRMKRLRLVDKMICIQIFERDLAQRLDFFREQRDFFIYIDDVIVVEIHDTQSEELFI
Ga0272421_100041039F074204N/AMIVFCILRQAQSRVLVLTLIDNEVSAYVFMNKFFTQQHHLLLHQLTHSRRLQEFDDQVALINDIIYIVEITMILDEHIEKLFFYVTELSQYLIIMNLS
Ga0272421_100041043F021896N/AMKNNLESEDFLKNVEYNLTFLRSDKEYIFSDETSERDSYSTIVIDESFIEVREI
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Institute for Fundamental Biomedical Research
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